Glad to say I was able to get the bike running tonight. Was able to make a few laps around the block without it dieing.
I am unable to say what I did to fix it. After the troubles yesterday, I pulled the tank again. Un- cable tied as much of the harness as I could and began checking for shorts, again. Having found none, I hooked up the fuel pump, with the tank off the bike, put the battery back in and viola' I got the power to the pump. All this with the harness hanging off the bike.
So I began the process of tying the wires back up, checking for fuel pump power after each section was strapped down, thinking if I had a short or broken wire I would at least know what section was last touched.
I do however have a check engine light now and several codes.
24-Front Coil, 25-Rear Coil, 16-Batt Pos Voltage, 35-Tach, 42-Cam Shaft Sensor.
Not to sure about coil messages since I have a brand new coil, wires and plugs. And the new coil measured the exact same as the old. Running through the Error 16 steps is also proving confusing as most steps are looking for Voltage drop, which I do not have in any of the steps.
Thinking of going through charging system tomorrow and inspecting the wiring around the voltage regulator, thinking that could be the cause for the first 3 codes.
I designed printed circuit boards for several years, so thankfully I know my way around a schematic and while I do not have the electrical engineering knowledge of how and why stuff works, I have enough general knowledge to troubleshoot (I hope) with assistance from great folks like you and a good manual.
I appreciate you breaking down the process, and I do understand what you are saying, I do see the variations of voltage on the relay depending on the current state. All my tests yesterday were with the engine not running.
I am calling today a success though, because it started/restarted and I rode it
Now just to continue trouble shooting until I get all the kinks worked out.
Thanks Again to you guys for taking time out of your day to help me. It is VERY appreciated, and I too am way to cheap to pay someone to do something, I hope I can do.