Here are some engine specs.
Engine Twin Cam 88®
Displacement 88.0 in.³
Bore x Stroke 3.75 in. x 4.00 in.
Torque 85.0 ft. lbs. @ 3000 rpm
Compression Ratio 8.9:1
Engine Air-cooled, Twin Cam 96™
Displacement 96 ci (1,584 cc)
Bore x Stroke 3.75 x 4.38 in. (95.18 x 111.13 mm)
Torque 92.6 ft. lbs. (125.5 Nm) @ 3,500 rpm
Compression Ratio 9.2:1
The higher displacement of the 96ci. comes from a longer stroke and higher compression ratio.The higher compression requires more exhaust flow as well as proper scavenging for the rear cylinder.The SE slipons were designed for the individual motors even though the pipe size and mounts are the same.Putting SE slip-ons from an 88ci. will give you more decibels then the stock pipes but if you are looking for performance gains and want to do a full stage1 with fuel management you are decieving yourself thinking that the SE. pipes from an 88ci. are giving you anything more than more noise.HD used to have proper flo charts on their site,but I see they now only have projected torque and hp. for the different pipes.Think of it this way,would you put a performance muffler for a toyota on a big block chevy?