Congratulations you have the best and most trouble free ign set up on the market, (in my opinion) I have ran that same setup since 1994 and once you set it, it's bullet proof, I used the Rivera stainless steel weights, if you did not you have to check every couple of years for any rust. But be aware you have no rev limit so make sure you have a kill switch on your handlebar, just in case.
The instructions you have are the same as mine, and I would recommend setting the timing with a light after you have it static timed and running, but not 100% necessary. It's just like the directions say, when your starting your front cylinder compression stroke, rotation of rear wheel in direction of normal travel (foward) look for the two dots to center in the timing hole, the go to the dyns s and hold the weights open and rotate the timing plate untill the light lights up then tighten hold down screws and recheck, you should be good to go.
Also make sure you use the special HD rivets (HD-8699) to secure the outer timing cover, they keep any rivet ends from falling into the timing compartment, it's not just a HD sales ploy
Good luck & let us know how she roars.